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Ronan Mt Fleming

Ronan Mt Fleming

Senior Research Associate

Faculty or Centre Luxembourg Centre for Systems Biomedicine
Postal Address Campus Belval, Université du Luxembourg
7, Avenue des Hauts Fourneaux
L-4362 BELVAL
Campus Office 3.05B
Email
Telephone (+352) 46 66 44 5528
Video Dr. Ronan Fleming (LCSB)
Dr. Ronan Fleming (LCSB)
Joined the University in 2013
 
Ronan Fleming (LCSB)

Principal Investigator in the Systems Biochemistry group (Fleming Lab)

Last updated on: Wednesday, 09 July 2014

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In press

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See detailGlobally convergent algorithms for finding zeros of duplomonotone mappings
Aragón Artacho, Francisco Javier; Fleming, Ronan MT

in Optimization Letters (in press)

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2014

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See detailFASTGAPFILL: Efficient gap filling in metabolic networks
Thiele, Ines; Vlassis, Nikos; Fleming, Ronan MT

in Bioinformatics (2014)

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2013

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See detailSystems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut.
Heinken, Almut; Sahoo, Swagatika; Fleming, Ronan MT; Thiele, Ines

in Gut microbes (2013), 4(1), 28-40

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See detailReal-time optical pH measurement in a standard microfluidic cell culture system
Magnusson, E. B.; Halldorsson, S.; Fleming, Ronan MT; Leosson, K.

in Biomedical Optics Express (2013), 4(9), 1749--1758

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See detailConsistent Estimation of Gibbs Energy Using Component Contributions
Noor, Elad; Haraldsdottir, Hulda; Milo, Ron; Fleming, Ronan MT

in PLoS Computational Biology (2013), 9(7), 1003098

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See detailRobust flux balance analysis of multi- scale biochemical reaction networks
Sun, Y; Fleming, Ronan MT; Thiele, Ines; Saunders, MA

in BMC Bioinformatics (2013)

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See detailA systems biology approach to studying the role of microbes in human health.
Thiele, Ines; Heinken, Almut Katrin; Fleming, Ronan MT

in Current Opinion in Biotechnology (2013), 24(1), 4-12

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See detailA community-driven global reconstruction of human metabolism.
Thiele, Ines; Swainston, N.; Fleming, Ronan MT; Hoppe, A.; Sahoo, Swagatika; Aurich, Maike Kathrin; Haraldsdottir, Hulda; Mo, M. L.; Rolfsson, O.; Stobbe, M. D.; Thorleifsson, S. G.; Agren, R.; Bölling, C.; Bordel, S.; Chavali, A. K.; Dobson, P.; Dunn, W. B.; Endler, L.; Hala, D.; Hucka, M.; Hull, D.; Jameson, D.; Jamshidi, N.; Jonsson, J. J.; Juty, N.; Keating, S.; Nookaew, I.; Le Novère, N.; Malys, N.; Mazein, A.; Papin, J. A.; Price, N. D.; Selkov, E. Sr; Sigurdsson, M. I.; Simeonidis, Evangelos; Sonnenschein, N.; Smallbone, K.; Sorokin, A.; van Beek, J. H.; Weichart, D.; Goryanin, I.; Nielsen, J.; Westerhoff, H. V.; Kell, D. B.; Mendes, P.; Palsson, B. O.

in Nature Biotechnology (2013)

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2012

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See detailA variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks
Fleming, Ronan MT; Maes, C. M.; Saunders, M. A.; Ye, Y.; Palsson, B. O.

in Journal of Theoretical Biology (2012), 292

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See detailQuantitative Assignment of Reaction Directionality in a Multicompartmental Human Metabolic Reconstruction
Haraldsdottir, Hulda; Thiele, Ines; Fleming, Ronan MT

in Biophysical Journal (2012), 102(8), 17031711

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See detailMonitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole-time of flight mass spectrometry (UPLC-Q-ToF-MS).
Paglia, Giuseppe; Hrafnsdottir, Sigrun; Magnusdottir, Manuela; Fleming, Ronan MT; Thorlacius, Steinunn; Palsson, Bernhard O.; Thiele, Ines

in Analytical and Bioanalytical Chemistry (2012), 402(3), 1183-98

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See detailA systems biology approach to drug targets in Pseudomonas aeruginosa biofilm.
Sigurdsson, Gunnar; Fleming, Ronan MT; Heinken, Almut; Thiele, Ines

in PLoS ONE (2012), 7(4), 34337

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See detailMultiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.
Thiele, Ines; Fleming, Ronan MT; Que, Richard; Bordbar, Aarash; Diep, Dinh; Palsson, Bernhard O.

in PLoS ONE (2012), 7(9), 45635

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2011

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See detailvon Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models.
Fleming, Ronan MT; Thiele, Ines

in Bioinformatics (Oxford, England) (2011), 27(1), 142-3

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See detailQuantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0.
Schellenberger, Jan; Que, Richard; Fleming, Ronan MT; Thiele, Ines; Orth, Jeffrey D.; Feist, Adam M.; Zielinski, Daniel C.; Bordbar, Aarash; Lewis, Nathan E.; Rahmanian, Sorena; Kang, Joseph; Hyduke, Daniel R.; Palsson, Bernhard O.

in Nature Protocols (2011), 6(9), 1290-307

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See detailA community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.
Thiele, Ines; Hyduke, Daniel R.; Steeb, Benjamin; Fankam, Guy; Allen, Douglas K.; Bazzani, Susanna; Charusanti, Pep; Chen, Feng-Chi; Fleming, Ronan MT; Hsiung, Chao A.; De Keersmaecker, Sigrid C. J.; Liao, Yu-Chieh; Marchal, Kathleen; Mo, Monica L.; Ozdemir, Emre; Raghunathan, Anu; Reed, Jennifer L.; Shin, Sook-Il; Sigurbjornsdottir, Sara; Steinmann, Jonas; Sudarsan, Suresh; Swainston, Neil; Thijs, Inge M.; Zengler, Karsten; Palsson, Bernhard O.; Adkins, Joshua N.; Bumann, Dirk

in BMC Systems Biology (2011), 5

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2010

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See detailIntegrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism.
Fleming, Ronan MT; Thiele, Ines; Provan, G.; Nasheuer, H. P.

in Journal of Theoretical Biology (2010), 264(3), 683-92

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See detailReconstruction and use of microbial metabolic networks: the core Escherichia coli metabolic model as an educational guide
Orth, J. D.; Fleming, Ronan MT; Palsson, B. O.

in Chapter 10.2.1 in Escherichia coli and Salmonella: Cellular and Molecular Biology, Washington, DC. (2010)

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See detailFunctional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery.
Thiele, Ines; Fleming, Ronan MT; Bordbar, Aarash; Schellenberger, Jan; Palsson, Bernhard O.

in Biophysical Journal (2010), 98(10), 2072-81

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2009

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See detailQuantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coli.
Fleming, Ronan MT; Thiele, Ines; Nasheuer, H. P.

in Biophysical Chemistry (2009), 145(2-3), 47-56

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See detailGenome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.
Thiele, Ines; Jamshidi, Neema; Fleming, Ronan MT; Palsson, Bernhard O.

in PLoS Computational Biology (2009), 5(3), 1000312

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