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Marek Ostaszewski

Marek Ostaszewski

Research scientist

Faculty or Centre Luxembourg Centre for Systems Biomedicine
Department Bioinformatics Core
Postal Address Université du Luxembourg
2, Avenue de l'Université
L-4365 Esch-sur-Alzette
Email
Telephone (+352) 46 66 44 5604
Fax (+352) 46 66 44 5500

Research Associate in the Bioinformatics Core group (Schneider Lab)

Last updated on: Thursday, 15 February 2018

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2020

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See detailFibroblast mitochondria in idiopathic Parkinson’s disease display morphological changes and enhanced resistance to depolarization
Krüger, Rejko; Balling, Rudolf; Antony, Paul; Kondratyeva, Olga; Ostaszewski, Marek; Baumuratov, Aidos; Grossmann, Dajana; Mommaerts, K.; Sokolowska, K.; Longhino, Laura; Poulain, J.F.; Diederich, N.J.

in Scientific Reports (2020)

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See detailBioKC: a platform for quality controlled curation and annotation of systems biology models
Vega Moreno, Carlos Gonzalo; Groues, Valentin; Ostaszewski, Marek; Satagopam, Venkata; Schneider, Reinhard

Scientific Conference (2020, September 04)

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See detailBioKC: a collaborative platform for systems biology model curation and annotation
Vega Moreno, Carlos Gonzalo; Groues, Valentin; Ostaszewski, Marek; Schneider, Reinhard; Satagopam, Venkata

in bioRxiv (2020)

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2019

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See detailOptimization ACE inhibition activity in hypertension based on random vector functional link and sine-cosine algorithm
Abd Elaziz, Mohammed; Hemedan, Ahmed; Ostaszewski, Marek; Schneider, Reinhard; Lu, Songfeng

in Chemometrics and Intelligent Laboratory Systems (2019)

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See detailClosing the gap between formats for storing layout information in systems biology.
Hoksza, David; Gawron, Piotr; Ostaszewski, Marek; Hausenauer, Jan; Schneider, Reinhard

in Briefings in bioinformatics (2019)

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See detailMINERVA API and plugins: opening molecular network analysis and visualization to the community.
Hoksza, David; Gawron, Piotr; Ostaszewski, Marek; Smula, Ewa; Schneider, Reinhard

in Bioinformatics (Oxford, England) (2019)

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See detailMachine Learning to Support the Presentation of Complex Pathway Graphs.
Nielsen, Sune Steinbjorn; Ostaszewski, Marek; McGee, Fintan; Hoksza, David; Zorzan, Simone

in IEEE/ACM transactions on computational biology and bioinformatics (2019)

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2018

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See detailSingle and Multiobjective Evolutionary Algorithms for Clustering Biomedical Information with Unknown Number of Clusters
Curi, María Eugenia; Carozzi, Lucía; Massobrio, Renzo; Nesmachnow, Sergio; Danoy, Grégoire; Ostaszewski, Marek; Bouvry, Pascal

in Bioinspired Optimization Methods and Their Applications (2018)

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See detailMolArt: a molecular structure annotation and visualization tool
Hoksza, David; Gawron, Piotr; Ostaszewski, Marek; Schneider, Reinhard

in Bioinformatics (2018)

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See detailSystems medicine disease maps: community-driven comprehensive representation of disease mechanisms.
Mazein, Alexander; Ostaszewski, Marek; Kuperstein, Inna; Watterson, Steven; Le Novere, Nicolas; Lefaudeux, Diane; De Meulder, Bertrand; Pellet, Johann; Balaur, Irina; Saqi, Mansoor; Nogueira, Maria Manuela; He, Feng; Parton, Andrew; Lemonnier, Nathanael; Gawron, Piotr; Gebel, Stephan; Hainaut, Pierre; Ollert, Markus; Dogrusoz, Ugur; Barillot, Emmanuel; Zinovyev, Andrei; Schneider, Reinhard; Balling, Rudi; Auffray, Charles

in NPJ systems biology and applications (2018), 4

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See detailCommunity-driven roadmap for integrated disease maps.
Ostaszewski, Marek; Gebel, Stephan; Kuperstein, Inna; Mazein, Alexander; Zinovyev, Andrei; Dogrusoz, Ugur; Hasenauer, Jan; Fleming, Ronan MT; Le Novere, Nicolas; Gawron, Piotr; Ligon, Thomas; Niarakis, Anna; Nickerson, David; Weindl, Daniel; Balling, Rudi; Barillot, Emmanuel; Auffray, Charles; Schneider, Reinhard

in Briefings in bioinformatics (2018)

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See detailClustering approaches for visual knowledge exploration in molecular interaction networks.
Ostaszewski, Marek; Kieffer, Emmanuel; Danoy, Gregoire; Schneider, Reinhard; Bouvry, Pascal

in BMC bioinformatics (2018), 19(1), 308

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2017

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See detailComputational Systems Biology Approach for the Study of Rheumatoid Arthritis: From a Molecular Map to a Dynamical Model
Singh, Vidisha; Ostaszewski, Marek; Kalliolias, George D.; Chiocchia, Gilles; Olaso, Robert; Petit-Teixeira, Elisabeth; Helikar, Thomas; Niarakis, Anna

in Genomics and Computational Biology (2017)

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2016

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See detailEnteric neurons from Parkinson's disease patients display ex vivo aberrations in mitochondrial structure.
Baumuratov, Aidos; Antony, Paul; Ostaszewski, Marek; He, F.; Salamanca Mino, Luis; Antunes, L.; Weber, J.; Longhino, L.; Derkinderen, P.; Koopman, W. J. H.; Diederich, N. J.

in Scientific reports (2016), 6

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See detailMetaheuristic Based Clustering Algorithms for Biological Hypergraphs
Changaival, Boonyarit; Danoy, Grégoire; Ostaszewski, Marek; Lavangnananda, Kittichai; Bouvry, Pascal

in Proceedings of META’2016, 6th International Conference on Metaheuristics and Nature Inspired computing (2016, October 27)

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See detailMINERVA—a platform for visualization and curation of molecular interaction networks
Gawron, Piotr; Ostaszewski, Marek; Satagopam, Venkata; Gebel, Stephan; Mazein, Alexander; Kuzma, Michael; Zorzan, Simone; McGee, Fintan; Otjacques, Benoit; Balling, Rudi; Schneider, Reinhard

in NPJ Systems Biology and Applications (2016)

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See detailNeurological Diseases from a Systems Medicine Point of View.
Ostaszewski, Marek; Skupin, Alexander; Balling, Rudi

in Methods in molecular biology (Clifton, N.J.) (2016), 1386

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See detailIntegration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.
Satagopam, Venkata; Gu, Wei; Eifes, Serge; Gawron, Piotr; Ostaszewski, Marek; Gebel, Stephan; Barbosa-Silva, Adriano; Balling, Rudi; Schneider, Reinhard

in Big data (2016), 4(2), 97-108

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2015

See detailStaining for unphosphorylated alpha-synuclein in the colon mucosa. No difference between patients with Parkinson's disease and healthy controls
Antony, Paul; Antunes, L; Frasquilho, S; Ostaszewski, Marek; Weber, J; Longhino, L; Baumuratov, Aidos; Derkinderen, P; Balling, Rudi; Diederich, Nico

Scientific Conference (2015, June)

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See detailPlatelet mitochondrial membrane potential in Parkinson's disease.
Antony, Paul; Boyd, Olga; Trefois, Christophe; Ammerlaan, Wim; Ostaszewski, Marek; Baumuratov, Aidos S.; Longhino, Laura; Antunes, Laurent; Koopman, Werner; Balling, Rudi; Diederich, Nico J.

in Annals of clinical and translational neurology (2015), 2(1), 67-73

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2014

See detailAnalysis of mitochondrial membrane potential in idiopathic Parkinson's disease: A case-control study
Antony, Paul; Boyd, Olga; Trefois, Christophe; Ostaszewski, Marek; Baumuratov, Aidos; Balling, Rudi; Diederich, Nico

Scientific Conference (2014, June 12)

See detailCuration of complex molecular pathways of Parkinson's disease as a collaborative scientific community effort
Antony, Paul; Ostaszewski, Marek; Gawron, P; Trefois, Christophe; Fujita, K.A.; Mosch, Sabine; Balling, Rudi

Scientific Conference (2014, June 12)

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See detailIntegrating Pathways of Parkinson's Disease in a Molecular Interaction Map
Fujita, Kazuhiro A.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

in Molecular Neurobiology (2014)

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See detailVisualization and Classification of Protein Secondary Structures using Self-Organizing Maps
Grevisse, Christian; Muller, Ian William; Jimenez Laredo, Juan Luis; Ostaszewski, Marek; Danoy, Grégoire; Bouvry, Pascal

in IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2014) (2014, December)

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2013

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See detailThe Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways
Ostaszewski, Marek; Fujita, Kazuhiro; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kolodkin, Alexey; Kodama, Akihiko; Satagopam, Venkata; Biryukov, Maria; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2013, March 09)

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2012

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See detailEvolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human
Ostaszewski, Marek; Eifes, Serge; del Sol Mesa, Antonio

in PLoS ONE (2012), 7(5), 36488

See detailConstructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology
Trefois, Christophe; Fujita, A. K.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samic; Glaab, Enrico; Crespo, Isaac; Perumal, T. M.; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2012, August)

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2010

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2009

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See detailMultiobjective Classification with moGEP: An Application in the Network Traffic Domain
Ostaszewski, Marek; Bouvry, Pascal; Seredynski, Franciszek

in GECCO '09: Proceedings of the 11th Annual conference on Genetic and evolutionary computation (2009)

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2008

See detailAn Approach to Intrusion Detection by Means of Idiotypic Networks Paradigm
Ostaszewski, Marek; Bouvry, Pascal; Seredynski, Franciszek

in IEEE World Congress on Computational Intelligence, WCCI 2008, Congress on Evolutionary Computation CEC 2008, Honk-Kong, June (2008)

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See detailAdaptive and Dynamic Intrusion Detection by Means of Idiotypic Networks Paradigm
Ostaszewski, Marek; Bouvry, Pascal; Seredynski, Franciszek

in The 21th IEEE International Parallel and Distributed Processing Symposium (IPDPS), NIDISC Workshop. (2008)

See detailNature inspired Algorithm-Based Fault Tolerance on Global Computing Platforms. Application to Symbolic Regression
Varrette, Sébastien; Ostaszewski, Marek; Bouvry, Pascal

in International Conference on Metaheuristics and Nature Inspired Computing (META'08) (2008)

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2007

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See detailCoevolutionary-based Mechanisms for Network Anomaly Detection
Ostaszewski, Marek; Seredynski, Franciszek; Bouvry, Pascal

in Journal of Mathematical Modelling and Algorithms (2007), 6(3), 411-431

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